HL_3J6Y_077
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 3J6Y|1|2S|C|1846, 3J6Y|1|2S|G|1848, 3J6Y|1|2S|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_077 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.2245
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
3J6Y|1|2S|C|1844
3J6Y|1|2S|G|1845
3J6Y|1|2S|C|1846
3J6Y|1|2S|A|1847
3J6Y|1|2S|G|1848
3J6Y|1|2S|C|1849
3J6Y|1|2S|A|1850
3J6Y|1|2S|G|1851
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 57
- 60S ribosomal protein L17
- Chain 77
- 60S ribosomal protein L37
- Chain 79
- 60S ribosomal protein L39
- Chain L4
- 60S ribosomal protein L4
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