HL_3J6Y_113
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 3J6Y|1|8S|C|84, 3J6Y|1|8S|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J6Y_113 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.2383
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J6Y|1|8S|U|69
3J6Y|1|8S|G|70
3J6Y|1|8S|A|71
3J6Y|1|8S|A|72
3J6Y|1|8S|U|73
3J6Y|1|8S|U|74
3J6Y|1|8S|G|75
3J6Y|1|8S|C|76
3J6Y|1|8S|A|77
3J6Y|1|8S|G|78
3J6Y|1|8S|A|79
3J6Y|1|8S|A|80
3J6Y|1|8S|U|81
3J6Y|1|8S|U|82
3J6Y|1|8S|C|83
3J6Y|1|8S|C|84
3J6Y|1|8S|G|85
3J6Y|1|8S|U|86
3J6Y|1|8S|G|87
3J6Y|1|8S|A|88
3J6Y|1|8S|A|89
Current chains
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 66
- 60S ribosomal protein L26
- Chain 75
- 60S ribosomal protein L35
- Chain 77
- 60S ribosomal protein L37
- Chain 79
- 60S ribosomal protein L39
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