HL_3J73_110

3D structure

PDB id

3J73 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGAAAA

Length

7 nucleotides

Bulged bases

3J73|1|S5|U|33

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J73_110 not in the Motif Atlas

Geometric match to HL_5VPO_138

Geometric discrepancy: 0.3712

The information below is about HL_5VPO_138

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_78364.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J73|1|S5|U|32
3J73|1|S5|U|33
3J73|1|S5|G|34
3J73|1|S5|A|35
3J73|1|S5|A|36
3J73|1|S5|A|37
3J73|1|S5|A|38

Current chains

Chain S5

A/P tRNA

Nearby chains

Chain 5

28S ribosomal RNA

Chain S2

18S ribosomal RNA

Chain S4

Messenger RNA

Chain Se

Ribosomal protein eS30