HL_3J77_027

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

3J77|1|1S|G|1243, 3J77|1|1S|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_027 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.222

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3J77|1|1S|A|1238
3J77|1|1S|U|1239
3J77|1|1S|U|1240
3J77|1|1S|G|1241
3J77|1|1S|A|1242
3J77|1|1S|G|1243
3J77|1|1S|A|1244
3J77|1|1S|G|1245
3J77|1|1S|C|1246
3J77|1|1S|U|1247

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 15

40S ribosomal protein S15

Chain 29

40S ribosomal protein S29

Chain 31

40S ribosomal protein S31