HL_3J77_029

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

3J77|1|1S|A|1312, 3J77|1|1S|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_029 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.4468

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3J77|1|1S|C|1309
3J77|1|1S|U|1310
3J77|1|1S|U|1311
3J77|1|1S|A|1312
3J77|1|1S|A|1313
3J77|1|1S|U|1314
3J77|1|1S|U|1315
3J77|1|1S|G|1316

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 17

40S ribosomal protein S17