HL_3J77_056
3D structure
- PDB id
- 3J77 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.2 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 3J77|1|2S|U|879, 3J77|1|2S|A|883, 3J77|1|2S|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J77_056 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.193
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
3J77|1|2S|A|876
3J77|1|2S|C|877
3J77|1|2S|G|878
3J77|1|2S|U|879
3J77|1|2S|G|880
3J77|1|2S|C|881
3J77|1|2S|A|882
3J77|1|2S|A|883
3J77|1|2S|A|884
3J77|1|2S|U|885
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 67
- 60S ribosomal protein L17
- Chain 87
- 60S ribosomal protein L37
- Chain L3
- 60S ribosomal protein L3
- Chain L4
- 60S ribosomal protein L4
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