HL_3J77_077

3D structure

PDB id

3J77 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.2 Å

Loop

Sequence

CGCAGCAG

Length

8 nucleotides

Bulged bases

3J77|1|2S|C|1846, 3J77|1|2S|G|1848, 3J77|1|2S|A|1850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J77_077 not in the Motif Atlas

Homologous match to HL_5TBW_041

Geometric discrepancy: 0.1717

The information below is about HL_5TBW_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

3J77|1|2S|C|1844
3J77|1|2S|G|1845
3J77|1|2S|C|1846
3J77|1|2S|A|1847
3J77|1|2S|G|1848
3J77|1|2S|C|1849
3J77|1|2S|A|1850
3J77|1|2S|G|1851

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 67

60S ribosomal protein L17

Chain 87

60S ribosomal protein L37

Chain 89

60S ribosomal protein L39

Chain L4

60S ribosomal protein L4