HL_3J78_020
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_020 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.252
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
3J78|1|1S|A|829
3J78|1|1S|U|830
3J78|1|1S|U|831
3J78|1|1S|U|832
3J78|1|1S|U|833
3J78|1|1S|G|834
3J78|1|1S|U|835
3J78|1|1S|U|836
3J78|1|1S|G|837
3J78|1|1S|G|838
3J78|1|1S|U|839
3J78|1|1S|U|840
3J78|1|1S|U|841
3J78|1|1S|C|842
3J78|1|1S|U|843
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
Coloring options: