HL_3J78_028
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 3J78|1|1S|G|1243, 3J78|1|1S|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_028 not in the Motif Atlas
- Homologous match to HL_4V88_213
- Geometric discrepancy: 0.2168
- The information below is about HL_4V88_213
- Detailed Annotation
- Anticodon loop related
- Broad Annotation
- Anticodon loop related
- Motif group
- HL_27115.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
3J78|1|1S|A|1238
3J78|1|1S|U|1239
3J78|1|1S|U|1240
3J78|1|1S|G|1241
3J78|1|1S|A|1242
3J78|1|1S|G|1243
3J78|1|1S|A|1244
3J78|1|1S|G|1245
3J78|1|1S|C|1246
3J78|1|1S|U|1247
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 15
- 40S ribosomal protein S15
- Chain 29
- 40S ribosomal protein S29
- Chain 31
- 40S ribosomal protein S31
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