HL_3J78_064
3D structure
- PDB id
- 3J78 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 3J78|1|2S|A|1245
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3J78_064 not in the Motif Atlas
- Homologous match to HL_5TBW_027
- Geometric discrepancy: 0.5154
- The information below is about HL_5TBW_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
3J78|1|2S|C|1239
3J78|1|2S|A|1240
3J78|1|2S|U|1241
3J78|1|2S|G|1242
3J78|1|2S|G|1243
3J78|1|2S|A|1244
3J78|1|2S|A|1245
3J78|1|2S|G|1246
3J78|1|2S|U|1247
3J78|1|2S|C|1248
3J78|1|2S|G|1249
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 62
- 60S ribosomal protein L12
Coloring options: