HL_3J78_065

3D structure

PDB id

3J78 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

3J78|1|2S|A|1270

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J78_065 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.3465

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3J78|1|2S|U|1267
3J78|1|2S|G|1268
3J78|1|2S|U|1269
3J78|1|2S|A|1270
3J78|1|2S|A|1271
3J78|1|2S|C|1272
3J78|1|2S|A|1273
3J78|1|2S|A|1274

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 62

60S ribosomal protein L12

Chain 90

60S ribosomal protein L40