HL_3J8G_072

3D structure

PDB id

3J8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Electron cryo-microscopy structure of EngA bound with the 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UAUUUAGGUA

Length

10 nucleotides

Bulged bases

3J8G|1|B|U|827, 3J8G|1|B|G|830

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J8G_072 not in the Motif Atlas

Geometric match to HL_5VOE_001

Geometric discrepancy: 0.3915

The information below is about HL_5VOE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20535.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

3J8G|1|B|U|824
3J8G|1|B|A|825
3J8G|1|B|U|826
3J8G|1|B|U|827
3J8G|1|B|U|828
3J8G|1|B|A|829
3J8G|1|B|G|830
3J8G|1|B|G|831
3J8G|1|B|U|832
3J8G|1|B|A|833

Current chains

Chain B

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain L

50S ribosomal protein L15