HL_3J92_032

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_032 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2853

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3J92|1|5|U|2006
3J92|1|5|G|2007
3J92|1|5|U|2008
3J92|1|5|A|2009
3J92|1|5|A|2010
3J92|1|5|C|2011
3J92|1|5|A|2012
3J92|1|5|A|2013

Current chains

Chain 5

28S rRNA

Nearby chains

Chain t

uL11

Chain v

NEMF

Chain w

Listerin