HL_3J92_054

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

3J92|1|5|U|3802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_054 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0998

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3J92|1|5|U|3796
3J92|1|5|C|3797
3J92|1|5|U|3798
3J92|1|5|A|3799
3J92|1|5|A|3800
3J92|1|5|U|3801
3J92|1|5|U|3802
3J92|1|5|A|3803
3J92|1|5|G|3804

Current chains

Chain 5

28S rRNA

Nearby chains

Chain V

uL14