HL_3J92_075

3D structure

PDB id

3J92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure and assembly pathway of the ribosome quality control complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

3J92|1|5|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J92_075 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3443

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

3J92|1|5|C|5021
3J92|1|5|U|5022
3J92|1|5|C|5023
3J92|1|5|C|5024
3J92|1|5|C|5025
3J92|1|5|U|5026
3J92|1|5|C|5027
3J92|1|5|G|5028

Current chains

Chain 5

28S rRNA

Nearby chains

Chain U

eL22