HL_3J9M_016

3D structure

PDB id

3J9M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome (class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUUCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9M_016 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1897

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

3J9M|1|A|C|2202
3J9M|1|A|G|2203
3J9M|1|A|U|2204
3J9M|1|A|U|2205
3J9M|1|A|C|2206
3J9M|1|A|A|2207
3J9M|1|A|A|2208
3J9M|1|A|G|2209

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

uL11m

Chain l

mL54