HL_3J9Z_005

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.19

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3J9Z|1|LA|U|158
3J9Z|1|LA|G|159
3J9Z|1|LA|A|160
3J9Z|1|LA|A|161
3J9Z|1|LA|U|162
3J9Z|1|LA|C|163
3J9Z|1|LA|C|164
3J9Z|1|LA|A|165
3J9Z|1|LA|U|166
3J9Z|1|LA|A|167
3J9Z|1|LA|G|168

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LV

50S ribosomal protein L28