HL_3J9Z_036

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

3J9Z|1|LA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_036 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3752

The information below is about HL_6VMY_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

3J9Z|1|LA|G|1450
3J9Z|1|LA|C|1451
3J9Z|1|LA|G|1452
3J9Z|1|LA|A|1453
3J9Z|1|LA|C|1454
3J9Z|1|LA|G|1455
3J9Z|1|LA|G|1456
3J9Z|1|LA|U|1457
3J9Z|1|LA|U|1458
3J9Z|1|LA|G|1459
3J9Z|1|LA|U|1460
3J9Z|1|LA|C|1461

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LJ

50S ribosomal protein L17