HL_3J9Z_102

3D structure

PDB id

3J9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

3J9Z|1|SA|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3J9Z_102 not in the Motif Atlas

Homologous match to HL_5J7L_024

Geometric discrepancy: 0.1414

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3J9Z|1|SA|G|1089
3J9Z|1|SA|U|1090
3J9Z|1|SA|U|1091
3J9Z|1|SA|A|1092
3J9Z|1|SA|A|1093
3J9Z|1|SA|G|1094
3J9Z|1|SA|U|1095
3J9Z|1|SA|C|1096

Current chains

Chain SA

16S ribosomal RNA

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SG

30S ribosomal protein S7

Chain SU

30S ribosomal protein S21