HL_3JA1_005

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2221

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

3JA1|1|LA|U|158
3JA1|1|LA|G|159
3JA1|1|LA|A|160
3JA1|1|LA|A|161
3JA1|1|LA|U|162
3JA1|1|LA|C|163
3JA1|1|LA|C|164
3JA1|1|LA|A|165
3JA1|1|LA|U|166
3JA1|1|LA|A|167
3JA1|1|LA|G|168

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LZ

50S ribosomal protein L28