HL_3JA1_045

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

3JA1|1|LA|A|1780, 3JA1|1|LA|U|1781, 3JA1|1|LA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_045 not in the Motif Atlas

Homologous match to HL_7RQB_045

Geometric discrepancy: 0.3051

The information below is about HL_7RQB_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.5

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3JA1|1|LA|U|1777
3JA1|1|LA|U|1778
3JA1|1|LA|U|1779
3JA1|1|LA|A|1780
3JA1|1|LA|U|1781
3JA1|1|LA|U|1782
3JA1|1|LA|A|1783
3JA1|1|LA|A|1784
3JA1|1|LA|A|1785
3JA1|1|LA|A|1786
3JA1|1|LA|A|1787

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L34

Chain LD

50S ribosomal protein L2