HL_3JA1_111

3D structure

PDB id

3JA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

3JA1|1|LA|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JA1_111 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.3627

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JA1|1|LA|A|382
3JA1|1|LA|C|383
3JA1|1|LA|A|384
3JA1|1|LA|C|385
3JA1|1|LA|G|386
3JA1|1|LA|U|387
3JA1|1|LA|G|388
3JA1|1|LA|G|389
3JA1|1|LA|U|390
3JA1|1|LA|A|391
3JA1|1|LA|U|392

Current chains

Chain LA

23S ribosomal RNA

Nearby chains

Chain LZ

50S ribosomal protein L28

Chain S2

Transfer RNA; tRNA