HL_3JAN_027

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

3JAN|1|5|U|1596, 3JAN|1|5|C|1598, 3JAN|1|5|A|1600, 3JAN|1|5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_027 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.1962

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

3JAN|1|5|A|1593
3JAN|1|5|C|1594
3JAN|1|5|G|1595
3JAN|1|5|U|1596
3JAN|1|5|G|1597
3JAN|1|5|C|1598
3JAN|1|5|A|1599
3JAN|1|5|A|1600
3JAN|1|5|A|1601
3JAN|1|5|U|1602

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain P

Ribosomal protein uL22

Chain j

Ribosomal protein eL37