HL_3JAN_035

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_035 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.341

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

3JAN|1|5|U|2006
3JAN|1|5|G|2007
3JAN|1|5|U|2008
3JAN|1|5|A|2009
3JAN|1|5|A|2010
3JAN|1|5|C|2011
3JAN|1|5|A|2012
3JAN|1|5|A|2013

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein uL11

Chain m

Ribosomal protein eL40