HL_3JAN_049
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 3JAN|1|5|C|2794, 3JAN|1|5|G|2796, 3JAN|1|5|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAN_049 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.1868
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
3JAN|1|5|C|2792
3JAN|1|5|G|2793
3JAN|1|5|C|2794
3JAN|1|5|A|2795
3JAN|1|5|G|2796
3JAN|1|5|C|2797
3JAN|1|5|A|2798
3JAN|1|5|G|2799
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain P
- Ribosomal protein uL22
- Chain j
- Ribosomal protein eL37
- Chain l
- Ribosomal protein eL39
Coloring options: