HL_3JAN_053

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

3JAN|1|5|A|3642, 3JAN|1|5|A|3643, 3JAN|1|5|U|3644, 3JAN|1|5|A|3648

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_053 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.188

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3JAN|1|5|U|3639
3JAN|1|5|U|3640
3JAN|1|5|U|3641
3JAN|1|5|A|3642
3JAN|1|5|A|3643
3JAN|1|5|U|3644
3JAN|1|5|U|3645
3JAN|1|5|A|3646
3JAN|1|5|A|3647
3JAN|1|5|A|3648
3JAN|1|5|A|3649

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain j

Ribosomal protein eL37