HL_3JAN_068

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

3JAN|1|5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_068 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2529

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JAN|1|5|C|4417
3JAN|1|5|G|4418
3JAN|1|5|U|4419
3JAN|1|5|U|4420
3JAN|1|5|C|4421
3JAN|1|5|A|4422
3JAN|1|5|U|4423
3JAN|1|5|A|4424
3JAN|1|5|G|4425

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain I

Ribosomal protein uL16

Chain m

Ribosomal protein eL40