3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GAUCAGAUACC
Length
11 nucleotides
Bulged bases
3JAN|1|S2|U|1061
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JAN_103 not in the Motif Atlas
Geometric match to HL_5J7L_017
Geometric discrepancy: 0.2487
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

3JAN|1|S2|G|1054
3JAN|1|S2|A|1055
3JAN|1|S2|U|1056
3JAN|1|S2|C|1057
3JAN|1|S2|A|1058
3JAN|1|S2|G|1059
3JAN|1|S2|A|1060
3JAN|1|S2|U|1061
3JAN|1|S2|A|1062
3JAN|1|S2|C|1063
3JAN|1|S2|C|1064

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain SO
Ribosomal protein uS11
Chain Sa
Ribosomal protein eS26

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