HL_3JAN_103

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

3JAN|1|S2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_103 not in the Motif Atlas

Geometric match to HL_5J7L_017

Geometric discrepancy: 0.2487

The information below is about HL_5J7L_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JAN|1|S2|G|1054
3JAN|1|S2|A|1055
3JAN|1|S2|U|1056
3JAN|1|S2|C|1057
3JAN|1|S2|A|1058
3JAN|1|S2|G|1059
3JAN|1|S2|A|1060
3JAN|1|S2|U|1061
3JAN|1|S2|A|1062
3JAN|1|S2|C|1063
3JAN|1|S2|C|1064

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SO

Ribosomal protein uS11

Chain Sa

Ribosomal protein eS26