HL_3JAN_103
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 3JAN|1|S2|U|1061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JAN_103 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.2487
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
3JAN|1|S2|G|1054
3JAN|1|S2|A|1055
3JAN|1|S2|U|1056
3JAN|1|S2|C|1057
3JAN|1|S2|A|1058
3JAN|1|S2|G|1059
3JAN|1|S2|A|1060
3JAN|1|S2|U|1061
3JAN|1|S2|A|1062
3JAN|1|S2|C|1063
3JAN|1|S2|C|1064
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SO
- Ribosomal protein uS11
- Chain Sa
- Ribosomal protein eS26
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