HL_3JAN_110

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

3JAN|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_110 not in the Motif Atlas

Homologous match to HL_4V88_215

Geometric discrepancy: 0.283

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3JAN|1|S2|G|1366
3JAN|1|S2|U|1367
3JAN|1|S2|U|1368
3JAN|1|S2|A|1369
3JAN|1|S2|A|1370
3JAN|1|S2|U|1371
3JAN|1|S2|U|1372
3JAN|1|S2|C|1373

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

Ribosomal protein eS17