HL_3JAN_127

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGAACAGC

Length

9 nucleotides

Bulged bases

3JAN|1|5|C|2814

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JAN_127 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2103

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

3JAN|1|5|G|2809
3JAN|1|5|U|2810
3JAN|1|5|G|2811
3JAN|1|5|A|2812
3JAN|1|5|A|2813
3JAN|1|5|C|2814
3JAN|1|5|A|2815
3JAN|1|5|G|2816
3JAN|1|5|C|2817

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19