HL_3JBN_007

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AAGGAAUU

Length

8 nucleotides

Bulged bases

3JBN|1|A|U|251

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_007 not in the Motif Atlas

Geometric match to HL_4V88_191

Geometric discrepancy: 0.2472

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3JBN|1|A|A|245
3JBN|1|A|A|246
3JBN|1|A|G|247
3JBN|1|A|G|248
3JBN|1|A|A|249
3JBN|1|A|A|250
3JBN|1|A|U|251
3JBN|1|A|U|252

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein eS4

Chain V

40S ribosomal protein uS17