HL_3JBN_015

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AUUUAAAACCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_015 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3512

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JBN|1|A|A|528
3JBN|1|A|U|529
3JBN|1|A|U|530
3JBN|1|A|U|531
3JBN|1|A|A|532
3JBN|1|A|A|533
3JBN|1|A|A|534
3JBN|1|A|A|535
3JBN|1|A|C|536
3JBN|1|A|C|537
3JBN|1|A|U|538

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein eS24

Chain E

40S ribosomal protein uS4