HL_3JBN_021

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

3JBN|1|A|G|973

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_021 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.3428

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3JBN|1|A|A|969
3JBN|1|A|G|970
3JBN|1|A|G|971
3JBN|1|A|U|972
3JBN|1|A|G|973
3JBN|1|A|A|974
3JBN|1|A|A|975
3JBN|1|A|A|976
3JBN|1|A|U|977
3JBN|1|A|U|978

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein uS11