HL_3JBN_059
3D structure
- PDB id
- 3JBN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 3JBN|1|AA|U|998, 3JBN|1|AA|A|1002, 3JBN|1|AA|A|1003
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBN_059 not in the Motif Atlas
- Homologous match to HL_5TBW_020
- Geometric discrepancy: 0.1396
- The information below is about HL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
3JBN|1|AA|A|995
3JBN|1|AA|C|996
3JBN|1|AA|G|997
3JBN|1|AA|U|998
3JBN|1|AA|G|999
3JBN|1|AA|C|1000
3JBN|1|AA|A|1001
3JBN|1|AA|A|1002
3JBN|1|AA|A|1003
3JBN|1|AA|U|1004
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein uL3
- Chain AF
- 60S ribosomal protein uL4
- Chain AW
- 60S ribosomal protein uL22
- Chain Ac
- 60S ribosomal protein eL37
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