HL_3JBN_085

3D structure

PDB id

3JBN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

3JBN|1|AA|A|2431, 3JBN|1|AA|A|2432, 3JBN|1|AA|U|2433, 3JBN|1|AA|A|2437

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBN_085 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2247

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3JBN|1|AA|U|2428
3JBN|1|AA|U|2429
3JBN|1|AA|U|2430
3JBN|1|AA|A|2431
3JBN|1|AA|A|2432
3JBN|1|AA|U|2433
3JBN|1|AA|U|2434
3JBN|1|AA|A|2435
3JBN|1|AA|A|2436
3JBN|1|AA|A|2437
3JBN|1|AA|A|2438

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AW

60S ribosomal protein uL22

Chain Ac

60S ribosomal protein eL37