HL_3JBO_010

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GGUAUUGGC

Length

9 nucleotides

Bulged bases

3JBO|1|A|G|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_010 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.1837

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

3JBO|1|A|G|336
3JBO|1|A|G|337
3JBO|1|A|U|338
3JBO|1|A|A|339
3JBO|1|A|U|340
3JBO|1|A|U|341
3JBO|1|A|G|342
3JBO|1|A|G|343
3JBO|1|A|C|344

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein eS8

Chain V

40S ribosomal protein uS17