HL_3JBO_016

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

AUUUAAAACCU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_016 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3472

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

3JBO|1|A|A|528
3JBO|1|A|U|529
3JBO|1|A|U|530
3JBO|1|A|U|531
3JBO|1|A|A|532
3JBO|1|A|A|533
3JBO|1|A|A|534
3JBO|1|A|A|535
3JBO|1|A|C|536
3JBO|1|A|C|537
3JBO|1|A|U|538

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein eS24

Chain E

40S ribosomal protein uS4