HL_3JBO_024
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 3JBO|1|A|U|1073
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_024 not in the Motif Atlas
- Geometric match to HL_5J7L_017
- Geometric discrepancy: 0.1471
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
3JBO|1|A|G|1066
3JBO|1|A|A|1067
3JBO|1|A|U|1068
3JBO|1|A|C|1069
3JBO|1|A|A|1070
3JBO|1|A|G|1071
3JBO|1|A|A|1072
3JBO|1|A|U|1073
3JBO|1|A|A|1074
3JBO|1|A|C|1075
3JBO|1|A|C|1076
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 3
- 40S ribosomal protein eS26
- Chain 7
- Transfer RNA; tRNA
- Chain AA
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 40S ribosomal protein uS11
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