HL_3JBO_030

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

3JBO|1|A|U|1416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_030 not in the Motif Atlas

Geometric match to HL_5J7L_024

Geometric discrepancy: 0.1489

The information below is about HL_5J7L_024

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3JBO|1|A|G|1411
3JBO|1|A|U|1412
3JBO|1|A|U|1413
3JBO|1|A|A|1414
3JBO|1|A|A|1415
3JBO|1|A|U|1416
3JBO|1|A|U|1417
3JBO|1|A|C|1418

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein eS17