HL_3JBO_054
3D structure
- PDB id
- 3JBO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GAUUCUUUAAAC
- Length
- 12 nucleotides
- Bulged bases
- 3JBO|1|AA|U|766, 3JBO|1|AA|U|769, 3JBO|1|AA|A|772
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_3JBO_054 not in the Motif Atlas
- Homologous match to HL_5TBW_015
- Geometric discrepancy: 0.538
- The information below is about HL_5TBW_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53971.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
3JBO|1|AA|G|764
3JBO|1|AA|A|765
3JBO|1|AA|U|766
3JBO|1|AA|U|767
3JBO|1|AA|C|768
3JBO|1|AA|U|769
3JBO|1|AA|U|770
3JBO|1|AA|U|771
3JBO|1|AA|A|772
3JBO|1|AA|A|773
3JBO|1|AA|A|774
3JBO|1|AA|C|775
Current chains
- Chain AA
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AF
- 60S ribosomal protein uL4
- Chain AL
- 60S ribosomal protein eL13
- Chain AZ
- 60S ribosomal protein uL24
Coloring options: