HL_3JBO_083

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUUAAUUAAAA

Length

11 nucleotides

Bulged bases

3JBO|1|AA|A|2431, 3JBO|1|AA|A|2432, 3JBO|1|AA|U|2433, 3JBO|1|AA|A|2437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_083 not in the Motif Atlas

Homologous match to HL_5TBW_046

Geometric discrepancy: 0.2311

The information below is about HL_5TBW_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

3JBO|1|AA|U|2428
3JBO|1|AA|U|2429
3JBO|1|AA|U|2430
3JBO|1|AA|A|2431
3JBO|1|AA|A|2432
3JBO|1|AA|U|2433
3JBO|1|AA|U|2434
3JBO|1|AA|A|2435
3JBO|1|AA|A|2436
3JBO|1|AA|A|2437
3JBO|1|AA|A|2438

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AD

60S ribosomal protein uL2

Chain AW

60S ribosomal protein uL22

Chain Ac

60S ribosomal protein eL37