HL_3JBO_091

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

UUAAAUAUUAACG

Length

13 nucleotides

Bulged bases

3JBO|1|AA|A|2976, 3JBO|1|AA|C|2983

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_091 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1343

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

3JBO|1|AA|U|2972
3JBO|1|AA|U|2973
3JBO|1|AA|A|2974
3JBO|1|AA|A|2975
3JBO|1|AA|A|2976
3JBO|1|AA|U|2977
3JBO|1|AA|A|2978
3JBO|1|AA|U|2979
3JBO|1|AA|U|2980
3JBO|1|AA|A|2981
3JBO|1|AA|A|2982
3JBO|1|AA|C|2983
3JBO|1|AA|G|2984

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain A4

60S ribosomal protein eL29

Chain AQ

60S ribosomal protein uL16

Chain AV

60S ribosomal protein eL21