HL_3JBO_098

3D structure

PDB id

3JBO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to P/E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGCAGAAG

Length

8 nucleotides

Bulged bases

3JBO|1|AA|G|3257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBO_098 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.2069

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3JBO|1|AA|C|3256
3JBO|1|AA|G|3257
3JBO|1|AA|C|3258
3JBO|1|AA|A|3259
3JBO|1|AA|G|3260
3JBO|1|AA|A|3261
3JBO|1|AA|A|3262
3JBO|1|AA|G|3263

Current chains

Chain AA

28S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein uL6

Chain Af

60S ribosomal protein eL40