HL_3JBP_006

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GAAAAGC

Length

7 nucleotides

Bulged bases

3JBP|1|A|G|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_006 not in the Motif Atlas

Geometric match to HL_6MJ0_008

Geometric discrepancy: 0.2973

The information below is about HL_6MJ0_008

Detailed Annotation

GNRA with GA tSW pair

Broad Annotation

GNRA with GA tSW pair

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

3JBP|1|A|G|152
3JBP|1|A|A|153
3JBP|1|A|A|154
3JBP|1|A|A|155
3JBP|1|A|A|156
3JBP|1|A|G|157
3JBP|1|A|C|158

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein eS24

Chain H

40S ribosomal protein eS6