HL_3JBP_010

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GGUAUUGGC

Length

9 nucleotides

Bulged bases

3JBP|1|A|G|343

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_010 not in the Motif Atlas

Geometric match to HL_4V88_193

Geometric discrepancy: 0.1578

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

3JBP|1|A|G|336
3JBP|1|A|G|337
3JBP|1|A|U|338
3JBP|1|A|A|339
3JBP|1|A|U|340
3JBP|1|A|U|341
3JBP|1|A|G|342
3JBP|1|A|G|343
3JBP|1|A|C|344

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein eS8

Chain V

40S ribosomal protein uS17