HL_3JBP_023

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_023 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.1855

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

3JBP|1|A|A|969
3JBP|1|A|G|970
3JBP|1|A|G|971
3JBP|1|A|U|972
3JBP|1|A|G|973
3JBP|1|A|A|974
3JBP|1|A|A|975
3JBP|1|A|A|976
3JBP|1|A|U|977
3JBP|1|A|U|978

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain P

40S ribosomal protein uS11