HL_3JBP_031

3D structure

PDB id

3JBP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-electron microscopy reconstruction of the Plasmodium falciparum 80S ribosome bound to E-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

3JBP|1|A|U|1416

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBP_031 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1265

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

3JBP|1|A|G|1411
3JBP|1|A|U|1412
3JBP|1|A|U|1413
3JBP|1|A|A|1414
3JBP|1|A|A|1415
3JBP|1|A|U|1416
3JBP|1|A|U|1417
3JBP|1|A|C|1418

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein eS17