3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
GUUAAGUC
Length
8 nucleotides
Bulged bases
3JBU|1|A|G|1094
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JBU_024 not in the Motif Atlas
Geometric match to HL_5J7L_024
Geometric discrepancy: 0.2159
The information below is about HL_5J7L_024
Detailed Annotation
T-loop related
Broad Annotation
T-loop
Motif group
HL_77436.5
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

3JBU|1|A|G|1089
3JBU|1|A|U|1090
3JBU|1|A|U|1091
3JBU|1|A|A|1092
3JBU|1|A|A|1093
3JBU|1|A|G|1094
3JBU|1|A|U|1095
3JBU|1|A|C|1096

Current chains

Chain A
16S rRNA

Nearby chains

Chain B
30S ribosomal protein S2
Chain G
30S ribosomal protein S7

Coloring options:


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