3D structure

PDB id
3JBU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps
Experimental method
ELECTRON MICROSCOPY
Resolution
3.64 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
3JBU|1|b|U|2473
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_3JBU_092 not in the Motif Atlas
Homologous match to HL_7A0S_059
Geometric discrepancy: 0.2795
The information below is about HL_7A0S_059
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_32735.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

3JBU|1|b|A|2471
3JBU|1|b|G|2472
3JBU|1|b|U|2473
3JBU|1|b|U|2474
3JBU|1|b|C|2475
3JBU|1|b|A|2476
3JBU|1|b|U|2477
3JBU|1|b|A|2478
3JBU|1|b|U|2479

Current chains

Chain b
23S rRNA

Nearby chains

Chain 8
50S ribosomal protein L36
Chain g
50S ribosomal protein L6

Coloring options:


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