HL_3JBU_092

3D structure

PDB id

3JBU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mechanisms of Ribosome Stalling by SecM at Multiple Elongation Steps

Experimental method

ELECTRON MICROSCOPY

Resolution

3.64 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

3JBU|1|b|U|2473

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JBU_092 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.2795

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

3JBU|1|b|A|2471
3JBU|1|b|G|2472
3JBU|1|b|U|2473
3JBU|1|b|U|2474
3JBU|1|b|C|2475
3JBU|1|b|A|2476
3JBU|1|b|U|2477
3JBU|1|b|A|2478
3JBU|1|b|U|2479

Current chains

Chain b

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L36

Chain g

50S ribosomal protein L6