HL_3JCE_021

3D structure

PDB id

3JCE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

3JCE|1|A|G|386, 3JCE|1|A|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_3JCE_021 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1287

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

3JCE|1|A|A|382
3JCE|1|A|C|383
3JCE|1|A|A|384
3JCE|1|A|C|385
3JCE|1|A|G|386
3JCE|1|A|U|387
3JCE|1|A|G|388
3JCE|1|A|G|389
3JCE|1|A|U|390
3JCE|1|A|A|391
3JCE|1|A|U|392

Current chains

Chain A

23 ribosomal RNA

Nearby chains

Chain 9

Transfer RNA; tRNA

Chain X

50S ribosomal protein L28